IL_4V9Q_333

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4V9Q|1|DA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_333 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.2893

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V9Q|1|DA|C|1051
4V9Q|1|DA|U|1052
4V9Q|1|DA|G|1053
4V9Q|1|DA|C|1054
4V9Q|1|DA|A|1055
4V9Q|1|DA|U|1056
*
4V9Q|1|DA|A|1204
4V9Q|1|DA|U|1205
4V9Q|1|DA|G|1206
4V9Q|1|DA|G|1207

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DN

30S ribosomal protein S14