IL_4V9Q_347

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_347 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1101

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9Q|1|DA|G|1401
4V9Q|1|DA|C|1402
4V9Q|1|DA|C|1403
4V9Q|1|DA|C|1404
*
4V9Q|1|DA|G|1497
4V9Q|1|DA|U|1498
4V9Q|1|DA|A|1499
4V9Q|1|DA|A|1500
4V9Q|1|DA|C|1501

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DV

Transfer RNA; tRNA

Chain DX

mRNA