IL_4V9Q_363
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGAUUGG*CCAUGAAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9Q_363 not in the Motif Atlas
- Geometric match to IL_4WF9_119
- Geometric discrepancy: 0.3213
- The information below is about IL_4WF9_119
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00087.1
- Basepair signature
- cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V9Q|1|BA|C|1303
4V9Q|1|BA|G|1304
4V9Q|1|BA|G|1305
4V9Q|1|BA|A|1306
4V9Q|1|BA|U|1307
4V9Q|1|BA|U|1308
4V9Q|1|BA|G|1309
4V9Q|1|BA|G|1310
*
4V9Q|1|BA|C|1327
4V9Q|1|BA|C|1328
4V9Q|1|BA|A|1329
4V9Q|1|BA|U|1330
4V9Q|1|BA|G|1331
4V9Q|1|BA|A|1332
4V9Q|1|BA|A|1333
4V9Q|1|BA|G|1334
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BM
- 30S ribosomal protein S13
- Chain BS
- 30S ribosomal protein S19
- Chain BU
- 30S ribosomal protein Thx
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