IL_4V9R_205

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V9R|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9R_205 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1052

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V9R|1|CA|G|683
4V9R|1|CA|A|684
4V9R|1|CA|G|685
4V9R|1|CA|U|686
4V9R|1|CA|A|687
4V9R|1|CA|G|688
*
4V9R|1|CA|C|699
4V9R|1|CA|G|700
4V9R|1|CA|C|701
4V9R|1|CA|A|702
4V9R|1|CA|G|703
4V9R|1|CA|A|704
4V9R|1|CA|U|705
4V9R|1|CA|A|706
4V9R|1|CA|C|707

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CK

30S Ribosomal Protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA