IL_4V9R_216

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9R_216 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2754

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V9R|1|CA|C|1006
4V9R|1|CA|C|1007
4V9R|1|CA|C|1008
4V9R|1|CA|G|1009
*
4V9R|1|CA|U|1020
4V9R|1|CA|G|1021
4V9R|1|CA|G|1022
4V9R|1|CA|G|1023

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains