IL_4V9R_282

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACC*GGC

Length

7 nucleotides

Bulged bases

4V9R|1|DA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9R_282 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.3227

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V9R|1|DA|G|1219
4V9R|1|DA|A|1220
4V9R|1|DA|C|1221
4V9R|1|DA|C|1221|||A
*
4V9R|1|DA|G|1228
4V9R|1|DA|G|1229
4V9R|1|DA|C|1230

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S Ribosomal Protein L20

Chain DV

50S Ribosomal Protein L21