IL_4V9R_361

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

4V9R|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9R_361 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.3065

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V9R|1|DA|G|880
4V9R|1|DA|G|881
4V9R|1|DA|G|882
*
4V9R|1|DA|C|894
4V9R|1|DA|U|895
4V9R|1|DA|A|896
4V9R|1|DA|C|897

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DZ

50S Ribosomal Protein L25