IL_4V9S_082

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_082 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0521

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V9S|1|BA|U|750
4V9S|1|BA|G|751
4V9S|1|BA|A|752
4V9S|1|BA|A|753
4V9S|1|BA|G|754
*
4V9S|1|BA|U|771
4V9S|1|BA|G|772
4V9S|1|BA|G|773
4V9S|1|BA|A|774
4V9S|1|BA|G|775

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S Ribosomal Protein L2