IL_4V9S_115

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

4V9S|1|BA|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_115 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0484

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V9S|1|BA|C|1483
4V9S|1|BA|U|1484
4V9S|1|BA|A|1485
4V9S|1|BA|G|1486
*
4V9S|1|BA|C|1598
4V9S|1|BA|G|1599
4V9S|1|BA|A|1600
4V9S|1|BA|A|1601
4V9S|1|BA|G|1602

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains