IL_4V9S_125

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_125 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.052

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V9S|1|BA|G|1713
4V9S|1|BA|G|1714
4V9S|1|BA|A|1715
4V9S|1|BA|A|1716
*
4V9S|1|BA|U|2015
4V9S|1|BA|C|2016

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3

Chain BO

50S Ribosomal Protein L14

Chain BT

50S Ribosomal Protein L19