IL_4V9S_126

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V9S|1|BA|G|2014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_126 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0575

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V9S|1|BA|A|1716
4V9S|1|BA|C|1717
4V9S|1|BA|U|1718
4V9S|1|BA|C|1719
4V9S|1|BA|U|1720
4V9S|1|BA|G|1721
*
4V9S|1|BA|C|2012
4V9S|1|BA|U|2013
4V9S|1|BA|G|2014
4V9S|1|BA|U|2015

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3

Chain BO

50S Ribosomal Protein L14