IL_4V9S_136

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V9S|1|BA|A|1960, 4V9S|1|BA|U|1966, 4V9S|1|BA|U|1985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_136 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1108

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4V9S|1|BA|C|1956
4V9S|1|BA|G|1957
4V9S|1|BA|A|1958
4V9S|1|BA|A|1959
4V9S|1|BA|A|1960
4V9S|1|BA|U|1961
4V9S|1|BA|U|1962
4V9S|1|BA|C|1963
4V9S|1|BA|C|1964
4V9S|1|BA|U|1965
4V9S|1|BA|U|1966
4V9S|1|BA|G|1967
*
4V9S|1|BA|C|1983
4V9S|1|BA|C|1984
4V9S|1|BA|U|1985
4V9S|1|BA|G|1986

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S Ribosomal Protein L2