IL_4V9S_214

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V9S|1|CA|C|1200, 4V9S|1|CA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_214 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.1165

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V9S|1|CA|G|1057
4V9S|1|CA|G|1058
*
4V9S|1|CA|U|1199
4V9S|1|CA|C|1200
4V9S|1|CA|A|1201
4V9S|1|CA|G|1202
4V9S|1|CA|C|1203

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal Protein S3

Chain CJ

30S Ribosomal Protein S10

Chain CN

30S Ribosomal Protein S14