IL_4V9S_218

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_218 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2462

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V9S|1|CA|G|1124
4V9S|1|CA|U|1125
4V9S|1|CA|U|1126
4V9S|1|CA|G|1127
*
4V9S|1|CA|C|1145
4V9S|1|CA|A|1146
4V9S|1|CA|C|1147
4V9S|1|CA|U|1148
4V9S|1|CA|C|1149

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CI

30S Ribosomal Protein S9

Chain CJ

30S Ribosomal Protein S10