IL_4V9S_242

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

4V9S|1|DA|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_242 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.5439

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

4V9S|1|DA|C|272|||J
4V9S|1|DA|G|274
4V9S|1|DA|G|275
4V9S|1|DA|A|276
4V9S|1|DA|C|277
4V9S|1|DA|A|278
4V9S|1|DA|C|279
*
4V9S|1|DA|G|361
4V9S|1|DA|U|362
4V9S|1|DA|G|363

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains