Motif IL_45612.4 Version IL_45612.4 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8VTW_009 | 8VTW | 0.8291 | 1 | 1A | LSU rRNA | C | 272|||J | G | 274 | G | 275 | C | 279 | * | G | 361 | U | 362 | G | 363 | cWW | cWW | ncWW | |
| 2 | IL_7Z4D_001 | 7Z4D | 0.1173 | 3 | A | sgRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 3 | IL_5VW1_001 | 5VW1 | 0.0875 | 3 | C | sgRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 4 | IL_6AEG_001 | 6AEG | 0.0000 | 3 | A | RNA (95-MER) | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 5 | IL_5B2T_001 | 5B2T | 0.0855 | 3 | A | Guide RNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 6 | IL_5FQ5_001 | 5FQ5 | 0.0960 | 3 | A | SGRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 7 | IL_7QR0_001 | 7QR0 | 0.1011 | 3 | A | TRAC sgRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 8 | IL_7QQX_001 | 7QQX | 0.0916 | 3 | A | FANCF sgRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 9 | IL_7QQP_001 | 7QQP | 0.0978 | 3 | A | AAVS1 sgRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 10 | IL_7ZO1_001 | 7ZO1 | 0.0975 | 3 | A | CD34 sgRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 11 | IL_7QR8_001 | 7QR8 | 0.0871 | 3 | A | PTPRC sgRNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 12 | IL_4ZT0_003 | 4ZT0 | 0.1251 | 3 | D | single-guide RNA | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 13 | IL_5F9R_001 | 5F9R | 0.1273 | 3 | A | RNA (116-MER) | C | 58 | A | 59 | A | 60 | U | 63 | * | A | 26 | G | 27 | G | 29 | cWW | cWW | ||
| 14 | IL_8KAH_002 | 8KAH | 0.1734 | 3 | I+A | RNA (65-MER) | C | 40 | A | 41 | A | 42 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGUU*AGAG | 13 |
| CGGAC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGU*GA | 13 |
| GGA*U | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.04 | Avg 0.19 | Max 0.86
Coloring options: