Motif IL_45612.4 Version IL_45612.4 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	4-5
1	IL_8VTW_009	8VTW	0.8291	1	1A	LSU rRNA	C	272\|\|\|J	G	274	G	275	C	279	*	G	361	U	362	G	363	cWW	cWW
2	IL_7Z4D_001	7Z4D	0.1173	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
3	IL_5VW1_001	5VW1	0.0875	3	C	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
4	IL_6AEG_001	6AEG	0.0000	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
5	IL_5B2T_001	5B2T	0.0855	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
6	IL_5FQ5_001	5FQ5	0.0960	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
7	IL_7QR0_001	7QR0	0.1011	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
8	IL_7QQX_001	7QQX	0.0916	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
9	IL_7QQP_001	7QQP	0.0978	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
10	IL_7ZO1_001	7ZO1	0.0975	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
11	IL_7QR8_001	7QR8	0.0871	3	A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
12	IL_4ZT0_003	4ZT0	0.1251	3	D	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	cWW	cWW
13	IL_5F9R_001	5F9R	0.1273	3	A	tracrRNA	C	58	A	59	A	60	U	63	*	A	26	G	27	G	29	cWW	cWW
14	IL_8KAH_002	8KAH	0.1734	3	I+A	tracrRNA	C	40	A	41	A	42	U	45	*	A	26	G	27	G	29	ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGUU*AGAG	13
CGGAC*GUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGU*GA	13
GGA*U	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (14)
Basepair signature: cWW-L-R-L-cWW
Heat map statistics: Min 0.04 | Avg 0.19 | Max 0.86

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Coloring options: Nucleotide numbers

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