IL_4V9S_250

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V9S|1|DA|G|801, 4V9S|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_250 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0459

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V9S|1|DA|G|674
4V9S|1|DA|A|675
4V9S|1|DA|A|676
4V9S|1|DA|A|677
4V9S|1|DA|C|678
*
4V9S|1|DA|G|799
4V9S|1|DA|A|800
4V9S|1|DA|G|801
4V9S|1|DA|A|802
4V9S|1|DA|U|803
4V9S|1|DA|A|804
4V9S|1|DA|G|805
4V9S|1|DA|C|806

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DP

50S Ribosomal Protein L15