IL_4V9S_291

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V9S|1|DA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_291 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0798

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9S|1|DA|G|1526
4V9S|1|DA|G|1527
4V9S|1|DA|A|1528
4V9S|1|DA|A|1528|||A
4V9S|1|DA|G|1529
*
4V9S|1|DA|U|1540
4V9S|1|DA|G|1541
4V9S|1|DA|A|1542
4V9S|1|DA|C|1543
4V9S|1|DA|A|1544
4V9S|1|DA|A|1545
4V9S|1|DA|C|1546

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains