IL_4V9S_307

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4V9S|1|DA|C|2055, 4V9S|1|DA|C|2612, 4V9S|1|DA|U|2613, 4V9S|1|DA|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_307 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.066

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9S|1|DA|A|2054
4V9S|1|DA|C|2055
4V9S|1|DA|G|2056
4V9S|1|DA|A|2057
*
4V9S|1|DA|U|2611
4V9S|1|DA|C|2612
4V9S|1|DA|U|2613
4V9S|1|DA|A|2614
4V9S|1|DA|U|2615

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D5

50S Ribosomal Protein L32

Chain DE

50S Ribosomal Protein L3

Chain DW

50S Ribosomal Protein L22