IL_4V9S_340

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACCC*GUGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_340 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3169

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V9S|1|AA|G|184
4V9S|1|AA|A|185
4V9S|1|AA|C|186
4V9S|1|AA|C|187
4V9S|1|AA|C|188
*
4V9S|1|AA|G|189|||L
4V9S|1|AA|U|190
4V9S|1|AA|G|191
4V9S|1|AA|U|192
4V9S|1|AA|C|193

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S Ribosomal Protein S20