IL_4V9S_344

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAGC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_344 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3321

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V9S|1|AA|C|1128
4V9S|1|AA|C|1129
4V9S|1|AA|A|1130
4V9S|1|AA|G|1131
4V9S|1|AA|C|1132
*
4V9S|1|AA|G|1142
4V9S|1|AA|G|1143
4V9S|1|AA|G|1144

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AI

30S Ribosomal Protein S9