IL_4V9S_345

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V9S|1|BA|G|977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_345 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0911

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9S|1|BA|C|891
4V9S|1|BA|G|892
4V9S|1|BA|C|893
4V9S|1|BA|U|894
4V9S|1|BA|G|895
4V9S|1|BA|A|896
4V9S|1|BA|C|897
*
4V9S|1|BA|G|973
4V9S|1|BA|G|974
4V9S|1|BA|U|975
4V9S|1|BA|G|976
4V9S|1|BA|G|977
4V9S|1|BA|A|978
4V9S|1|BA|G|979

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B3

50S Ribosomal Protein L30