IL_4V9S_351
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9S_351 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0667
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V9S|1|CA|G|673
4V9S|1|CA|G|674
4V9S|1|CA|A|675
4V9S|1|CA|A|676
4V9S|1|CA|U|677
*
4V9S|1|CA|G|713
4V9S|1|CA|G|714
4V9S|1|CA|A|715
4V9S|1|CA|A|716
4V9S|1|CA|C|717
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CF
- 30S Ribosomal Protein S6
- Chain CK
- 30S Ribosomal Protein S11
- Chain CR
- 30S Ribosomal Protein S18
- Chain DD
- 50S Ribosomal Protein L2
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