IL_4V9S_353

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V9S|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_353 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1136

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9S|1|DA|C|844
4V9S|1|DA|G|845
4V9S|1|DA|C|846
4V9S|1|DA|U|847
4V9S|1|DA|G|848
4V9S|1|DA|A|849
4V9S|1|DA|C|850
*
4V9S|1|DA|G|927
4V9S|1|DA|G|928
4V9S|1|DA|U|930
4V9S|1|DA|G|931
4V9S|1|DA|G|932
4V9S|1|DA|A|933
4V9S|1|DA|G|934

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain BP

50S Ribosomal Protein L15

Chain D3

50S Ribosomal Protein L30