IL_4W21_018
3D structure
- PDB id
- 4W21 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 4W21|1|5|G|409, 4W21|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20094.1
- Basepair signature
- cWW-tSS-L-R-R-tWH-R-R-R-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4W21|1|5|G|387
4W21|1|5|A|388
4W21|1|5|A|389
4W21|1|5|C|390
*
4W21|1|5|G|401
4W21|1|5|A|402
4W21|1|5|G|403
4W21|1|5|U|404
4W21|1|5|U|405
4W21|1|5|C|406
4W21|1|5|A|407
4W21|1|5|A|408
4W21|1|5|G|409
4W21|1|5|A|410
4W21|1|5|G|411
4W21|1|5|G|412
4W21|1|5|G|413
4W21|1|5|C|414
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA
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