IL_4W21_026

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCGUG*CCGGCGACC

Length

16 nucleotides

Bulged bases

4W21|1|5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53504.1

Basepair signature

cWW-L-R-R-R-R-R-L-L-L-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4W21|1|5|G|487
4W21|1|5|G|488
4W21|1|5|C|489
4W21|1|5|C|490
4W21|1|5|G|491
4W21|1|5|U|492
4W21|1|5|G|493
*
4W21|1|5|C|661
4W21|1|5|C|662
4W21|1|5|G|663
4W21|1|5|G|664
4W21|1|5|C|665
4W21|1|5|G|666
4W21|1|5|A|667
4W21|1|5|C|668
4W21|1|5|C|669

Current chains

Chain 5

28S ribosomal RNA

Nearby chains