IL_4W21_035

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

4W21|1|5|G|933, 4W21|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75176.1

Basepair signature

cWW-L-R-R-R-R-R-R-R-L-L-cWW

Number of instances in this motif group

1

Unit IDs

4W21|1|5|G|731
4W21|1|5|A|732
4W21|1|5|A|733
4W21|1|5|G|734
4W21|1|5|G|735
*
4W21|1|5|C|928
4W21|1|5|A|929
4W21|1|5|G|930
4W21|1|5|C|931
4W21|1|5|A|932
4W21|1|5|G|933
4W21|1|5|C|934
4W21|1|5|A|935
4W21|1|5|C|936
4W21|1|5|U|937
4W21|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA

Nearby chains