IL_4W21_041

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCAC*GAGGGGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98284.1

Basepair signature

cWW-tSH-tWH-tHW-tHS-cWW-cWW

Number of instances in this motif group

9

Unit IDs

4W21|1|5|G|1074
4W21|1|5|G|1075
4W21|1|5|C|1076
4W21|1|5|C|1077
4W21|1|5|A|1078
4W21|1|5|C|1079
*
4W21|1|5|G|1221
4W21|1|5|A|1222
4W21|1|5|G|1232
4W21|1|5|G|1233
4W21|1|5|G|1234
4W21|1|5|G|1235
4W21|1|5|C|1236

Current chains

Chain 5

28S ribosomal RNA

Nearby chains