IL_4W21_055

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGAAAG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

4W21|1|5|A|1650, 4W21|1|5|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92115.1

Basepair signature

cWW-cWW-L-R-R-tHW-L-R-tHH-cWW

Number of instances in this motif group

1

Unit IDs

4W21|1|5|C|1520
4W21|1|5|C|1521
4W21|1|5|G|1522
4W21|1|5|A|1523
4W21|1|5|A|1524
4W21|1|5|A|1525
4W21|1|5|G|1526
*
4W21|1|5|C|1648
4W21|1|5|U|1649
4W21|1|5|A|1650
4W21|1|5|G|1651
4W21|1|5|U|1652
4W21|1|5|A|1653
4W21|1|5|G|1654
4W21|1|5|C|1655
4W21|1|5|U|1656
4W21|1|5|G|1657

Current chains

Chain 5

28S ribosomal RNA

Nearby chains