IL_4W21_080
3D structure
- PDB id
- 4W21 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCUCAUCAG*CUGGAGCG
- Length
- 18 nucleotides
- Bulged bases
- 4W21|1|5|U|1930, 4W21|1|5|C|1931, 4W21|1|5|G|2055, 4W21|1|5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04023.1
- Basepair signature
- cWW-R-bif-tWW-L-L-L-tWH-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
4W21|1|5|C|1924
4W21|1|5|G|1925
4W21|1|5|C|1926
4W21|1|5|U|1927
4W21|1|5|C|1928
4W21|1|5|A|1929
4W21|1|5|U|1930
4W21|1|5|C|1931
4W21|1|5|A|1932
4W21|1|5|G|1933
*
4W21|1|5|C|2053
4W21|1|5|U|2054
4W21|1|5|G|2055
4W21|1|5|G|2056
4W21|1|5|A|2057
4W21|1|5|G|2058
4W21|1|5|C|2059
4W21|1|5|G|2060
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA
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