IL_4W21_121

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAAUGCCUCGUCA*UGACGCG

Length

22 nucleotides

Bulged bases

4W21|1|5|A|3785, 4W21|1|5|C|3791, 4W21|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93035.1

Basepair signature

cWW-L-tHW-tWW-L-L-tHH-cSH-cWS-cWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4W21|1|5|C|3781
4W21|1|5|C|3782
4W21|1|5|A|3783
4W21|1|5|A|3784
4W21|1|5|A|3785
4W21|1|5|U|3786
4W21|1|5|G|3787
4W21|1|5|C|3788
4W21|1|5|C|3789
4W21|1|5|U|3790
4W21|1|5|C|3791
4W21|1|5|G|3792
4W21|1|5|U|3793
4W21|1|5|C|3794
4W21|1|5|A|3795
*
4W21|1|5|U|3805
4W21|1|5|G|3806
4W21|1|5|A|3807
4W21|1|5|C|3808
4W21|1|5|G|3809
4W21|1|5|C|3810
4W21|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains