IL_4W21_158

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCUCGGAUAGC*GUGCGGAGUGC

Length

23 nucleotides

Bulged bases

4W21|1|5|C|4756, 4W21|1|5|C|4757, 4W21|1|5|U|4763, 4W21|1|5|C|4871, 4W21|1|5|A|4874, 4W21|1|5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92733.1

Basepair signature

cWW-L-R-R-R-R-L-L-cSS-L-cWH-cWS-cWW

Number of instances in this motif group

1

Unit IDs

4W21|1|5|G|4755
4W21|1|5|C|4756
4W21|1|5|C|4757
4W21|1|5|U|4758
4W21|1|5|C|4759
4W21|1|5|G|4760
4W21|1|5|G|4761
4W21|1|5|A|4762
4W21|1|5|U|4763
4W21|1|5|A|4764
4W21|1|5|G|4765
4W21|1|5|C|4766
*
4W21|1|5|G|4868
4W21|1|5|U|4869
4W21|1|5|G|4870
4W21|1|5|C|4871
4W21|1|5|G|4872
4W21|1|5|G|4873
4W21|1|5|A|4874
4W21|1|5|G|4875
4W21|1|5|U|4876
4W21|1|5|G|4877
4W21|1|5|C|4878

Current chains

Chain 5

28S ribosomal RNA

Nearby chains