IL_4W21_180
3D structure
- PDB id
- 4W21 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCCCG*CGCGGG
- Length
- 11 nucleotides
- Bulged bases
- 4W21|1|5|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W21_180 not in the Motif Atlas
- Geometric match to IL_6CZR_167
- Geometric discrepancy: 0.3508
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4W21|1|5|C|123
4W21|1|5|C|124
4W21|1|5|C|125
4W21|1|5|C|126
4W21|1|5|G|127
*
4W21|1|5|C|141
4W21|1|5|G|142
4W21|1|5|C|143
4W21|1|5|G|144
4W21|1|5|G|145
4W21|1|5|G|146
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: