IL_4W21_187

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUAGAGGUCUUGG*UCAACCUAUUCU

Length

26 nucleotides

Bulged bases

4W21|1|5|U|1754, 4W21|1|5|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|A|1746
4W21|1|5|U|1747
4W21|1|5|U|1748
4W21|1|5|A|1749
4W21|1|5|G|1750
4W21|1|5|A|1751
4W21|1|5|G|1752
4W21|1|5|G|1753
4W21|1|5|U|1754
4W21|1|5|C|1755
4W21|1|5|U|1756
4W21|1|5|U|1757
4W21|1|5|G|1758
4W21|1|5|G|1759
*
4W21|1|5|U|1773
4W21|1|5|C|1774
4W21|1|5|A|1775
4W21|1|5|A|1776
4W21|1|5|C|1777
4W21|1|5|C|1778
4W21|1|5|U|1779
4W21|1|5|A|1780
4W21|1|5|U|1781
4W21|1|5|U|1782
4W21|1|5|C|1783
4W21|1|5|U|1784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA