IL_4W21_189

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCG*CGC

Length

7 nucleotides

Bulged bases

4W21|1|5|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W21_189 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.1933

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4W21|1|5|G|2082
4W21|1|5|C|2083
4W21|1|5|C|2084
4W21|1|5|G|2085
*
4W21|1|5|C|2272
4W21|1|5|G|2273
4W21|1|5|C|2274

Current chains

Chain 5

28S ribosomal RNA

Nearby chains