IL_4W21_190

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCG*CCCCCGGAGCCCCGCGGACGCUACG

Length

67 nucleotides

Bulged bases

4W21|1|5|U|2090, 4W21|1|5|A|2093, 4W21|1|5|G|2111, 4W21|1|5|G|2114, 4W21|1|5|G|2115, 4W21|1|5|C|2116, 4W21|1|5|C|2119, 4W21|1|5|G|2122, 4W21|1|5|C|2123, 4W21|1|5|G|2124, 4W21|1|5|C|2248, 4W21|1|5|C|2249, 4W21|1|5|C|2256, 4W21|1|5|G|2259, 4W21|1|5|C|2260, 4W21|1|5|U|2267, 4W21|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|2087
4W21|1|5|A|2088
4W21|1|5|G|2089
4W21|1|5|U|2090
4W21|1|5|C|2091
4W21|1|5|G|2092
4W21|1|5|A|2093
4W21|1|5|G|2094
4W21|1|5|A|2095
4W21|1|5|G|2096
4W21|1|5|U|2097
4W21|1|5|G|2098
4W21|1|5|G|2099
4W21|1|5|A|2100
4W21|1|5|C|2101
4W21|1|5|G|2102
4W21|1|5|G|2103
4W21|1|5|G|2104
4W21|1|5|A|2105
4W21|1|5|G|2106
4W21|1|5|C|2107
4W21|1|5|G|2108
4W21|1|5|G|2109
4W21|1|5|C|2110
4W21|1|5|G|2111
4W21|1|5|G|2112
4W21|1|5|G|2113
4W21|1|5|G|2114
4W21|1|5|G|2115
4W21|1|5|C|2116
4W21|1|5|G|2117
4W21|1|5|G|2118
4W21|1|5|C|2119
4W21|1|5|G|2120
4W21|1|5|C|2121
4W21|1|5|G|2122
4W21|1|5|C|2123
4W21|1|5|G|2124
4W21|1|5|C|2125
4W21|1|5|G|2126
4W21|1|5|C|2127
4W21|1|5|G|2128
*
4W21|1|5|C|2246
4W21|1|5|C|2247
4W21|1|5|C|2248
4W21|1|5|C|2249
4W21|1|5|C|2250
4W21|1|5|G|2251
4W21|1|5|G|2252
4W21|1|5|A|2253
4W21|1|5|G|2254
4W21|1|5|C|2255
4W21|1|5|C|2256
4W21|1|5|C|2257
4W21|1|5|C|2258
4W21|1|5|G|2259
4W21|1|5|C|2260
4W21|1|5|G|2261
4W21|1|5|G|2262
4W21|1|5|A|2263
4W21|1|5|C|2264
4W21|1|5|G|2265
4W21|1|5|C|2266
4W21|1|5|U|2267
4W21|1|5|A|2268
4W21|1|5|C|2269
4W21|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains