IL_4W21_193

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAAGCCG*UGGCCCUUGAAAAU

Length

22 nucleotides

Bulged bases

4W21|1|5|C|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|A|2598
4W21|1|5|G|2599
4W21|1|5|A|2600
4W21|1|5|A|2601
4W21|1|5|G|2602
4W21|1|5|C|2603
4W21|1|5|C|2604
4W21|1|5|G|2605
*
4W21|1|5|U|2734
4W21|1|5|G|2735
4W21|1|5|G|2736
4W21|1|5|C|2737
4W21|1|5|C|2738
4W21|1|5|C|2739
4W21|1|5|U|2740
4W21|1|5|U|2741
4W21|1|5|G|2742
4W21|1|5|A|2743
4W21|1|5|A|2744
4W21|1|5|A|2745
4W21|1|5|A|2746
4W21|1|5|U|2747

Current chains

Chain 5

28S ribosomal RNA

Nearby chains