IL_4W21_207

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGGUUUCGUACGU*AUUGAAAGUCAGCCCUCG

Length

33 nucleotides

Bulged bases

4W21|1|5|G|5041, 4W21|1|5|G|5049, 4W21|1|5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|4996
4W21|1|5|G|4997
4W21|1|5|G|4998
4W21|1|5|G|4999
4W21|1|5|G|5000
4W21|1|5|U|5001
4W21|1|5|U|5002
4W21|1|5|U|5003
4W21|1|5|C|5004
4W21|1|5|G|5005
4W21|1|5|U|5006
4W21|1|5|A|5007
4W21|1|5|C|5008
4W21|1|5|G|5009
4W21|1|5|U|5010
*
4W21|1|5|A|5038
4W21|1|5|U|5039
4W21|1|5|U|5040
4W21|1|5|G|5041
4W21|1|5|A|5042
4W21|1|5|A|5043
4W21|1|5|A|5044
4W21|1|5|G|5045
4W21|1|5|U|5046
4W21|1|5|C|5047
4W21|1|5|A|5048
4W21|1|5|G|5049
4W21|1|5|C|5050
4W21|1|5|C|5051
4W21|1|5|C|5052
4W21|1|5|U|5053
4W21|1|5|C|5054
4W21|1|5|G|5055

Current chains

Chain 5

28S ribosomal RNA

Nearby chains