IL_4W23_001

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAUAUG*CGUAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82188.5

Basepair signature

cWW-tSH-L-R-R-R-R-L-L-L-cWW

Number of instances in this motif group

7

Unit IDs

4W23|1|2|G|23
4W23|1|2|C|24
4W23|1|2|A|25
4W23|1|2|U|26
4W23|1|2|A|27
4W23|1|2|U|28
4W23|1|2|G|29
*
4W23|1|2|C|645
4W23|1|2|G|646
4W23|1|2|U|647
4W23|1|2|A|648
4W23|1|2|U|649
4W23|1|2|A|650
4W23|1|2|U|651

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS12