Motif IL_82188.5 Version IL_82188.5 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 5-7 | 5-10 | 6-7 | 6-9 | 7-8 | 10-11 | 12-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBZ_005 | 2QBZ | 0.3841 | 0 | X | M-box riboswitch (ykoK leader) | A | 60 | A | 61 | A | 62 | A | 63 | A | 64 | U | 65 | G | 66 | * | C | 75 | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | cWW | tSH | ntHS | ncWWa | cWW | |||||
| 2 | IL_4A1B_090 | 4A1B | 0.0000 | 0 | 1 | LSU rRNA | U | 2206 | C | 2207 | A | 2208 | A | 2209 | A | 2210 | G | 2211 | U | 2212 | * | A | 2223 | A | 2224 | C | 2225 | C | 2226 | A | 2227 | A | 2228 | G | 2229 | cWW | ntSH | ncWW | cWW | ||||||
| 3 | IL_4CUV_096 | 4CUV | 0.1278 | 0 | 1 | LSU rRNA | U | 2211 | C | 2212 | A | 2213 | A | 2214 | A | 2215 | G | 2216 | U | 2217 | * | A | 2228 | A | 2229 | C | 2230 | C | 2231 | A | 2232 | A | 2233 | G | 2234 | cWW | cWW | cWW | |||||||
| 4 | IL_1S72_069 | 1S72 | 0.3678 | 0 | 0 | LSU rRNA | U | 1907 | G | 1908 | A | 1909 | A | 1910 | C | 1911 | A | 1912 | C | 1913 | * | G | 1926 | A | 1927 | C | 1928 | G | 1929 | A | 1930 | A | 1931 | G | 1932 | cWW | tSH | ncWw | cWW | ||||||
| 5 | IL_2OIU_002 | 2OIU | 0.7083 | 0 | P | L1 Ribozyme RNA Ligase | C | 21 | G | 22 | A | 23 | C | 24 | C | 25 | A | 26 | G | 27 | * | C | 34 | U | 35 | C | 36 | U | 37 | U | 38 | A | 39 | G | 40 | cWW | tSH | ncwW | cWW | cWW | |||||
| 6 | IL_4W21_101 | 4W21 | 0.6739 | 1 | 5 | LSU rRNA | C | 2685 | G | 2686 | G | 2688 | C | 2689 | C | 2690 | U | 2691 | U | 2692 | * | A | 2642 | G | 2643 | G | 2644 | G | 2645 | C | 2646 | A | 2647 | G | 2648 | cWW | ncSH | cWW | |||||||
| 7 | IL_4W23_001 | 4W23 | 0.8165 | 0 | 2 | SSU rRNA | G | 23 | C | 24 | A | 25 | U | 26 | A | 27 | U | 28 | G | 29 | * | C | 645 | G | 646 | U | 647 | A | 648 | U | 649 | A | 650 | U | 651 | cWW | cWW | cwW | ncWH | cWW | ncWH | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAAAGU*AACCAAG | 2 |
| AAAAAUG*CGCCAAU | 1 |
| UGAACAC*GACGAAG | 1 |
| CGACCAG*CUCUUAG | 1 |
| CGUGCCUU*AGGGCAG | 1 |
| GCAUAUG*CGUAUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAG*ACCAA | 2 |
| AAAAU*GCCAA | 1 |
| GAACA*ACGAA | 1 |
| GACCA*UCUUA | 1 |
| GUGCCU*GGGCA | 1 |
| CAUAU*GUAUA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_82188.5 | Only in the parent motif |
|---|---|---|---|
| IL_82188.4 Compare | IL_1S72_069, IL_2OIU_002, IL_4A1B_090, IL_2QBZ_005, IL_4CUV_096 | IL_4W21_101, IL_4W23_001 | IL_1VWW_103, IL_4CUX_011 |
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-L-R-R-R-R-L-L-L-cWW
- Heat map statistics
- Min 0.13 | Avg 0.55 | Max 0.91
Coloring options: