Motif IL_82188.5 Version IL_82188.5 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-13	3-11	5-7	5-10	6-7	6-9	7-8	10-11	12-13
1	IL_2QBZ_005	2QBZ	0.3841	0	X	M-box riboswitch (ykoK leader)	A	60	A	61	A	62	A	63	A	64	U	65	G	66	*	C	75	G	76	C	77	C	78	A	79	A	80	U	81	cWW	tSH			ntHS		ncWWa	cWW
2	IL_4A1B_090	4A1B	0.0000	0	1	LSU rRNA	U	2206	C	2207	A	2208	A	2209	A	2210	G	2211	U	2212	*	A	2223	A	2224	C	2225	C	2226	A	2227	A	2228	G	2229	cWW	ntSH					ncWW	cWW
3	IL_4CUV_096	4CUV	0.1278	0	1	LSU rRNA	U	2211	C	2212	A	2213	A	2214	A	2215	G	2216	U	2217	*	A	2228	A	2229	C	2230	C	2231	A	2232	A	2233	G	2234	cWW						cWW	cWW
4	IL_1S72_069	1S72	0.3678	0	0	LSU rRNA	U	1907	G	1908	A	1909	A	1910	C	1911	A	1912	C	1913	*	G	1926	A	1927	C	1928	G	1929	A	1930	A	1931	G	1932	cWW	tSH					ncWw	cWW
5	IL_2OIU_002	2OIU	0.7083	0	P	L1 Ribozyme RNA Ligase	C	21	G	22	A	23	C	24	C	25	A	26	G	27	*	C	34	U	35	C	36	U	37	U	38	A	39	G	40	cWW	tSH			ncwW		cWW	cWW
6	IL_4W21_101	4W21	0.6739	1	5	LSU rRNA	C	2685	G	2686	G	2688	C	2689	C	2690	U	2691	U	2692	*	A	2642	G	2643	G	2644	G	2645	C	2646	A	2647	G	2648	cWW					ncSH		cWW
7	IL_4W23_001	4W23	0.8165	0	2	SSU rRNA	G	23	C	24	A	25	U	26	A	27	U	28	G	29	*	C	645	G	646	U	647	A	648	U	649	A	650	U	651	cWW	cWW	cwW	ncWH				cWW	ncWH	ncWH

3D structures

Complete motif including flanking bases

Sequence	Counts
UCAAAGU*AACCAAG	2
AAAAAUG*CGCCAAU	1
UGAACAC*GACGAAG	1
CGACCAG*CUCUUAG	1
CGUGCCUU*AGGGCAG	1
GCAUAUG*CGUAUAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAAAG*ACCAA	2
AAAAU*GCCAA	1
GAACA*ACGAA	1
GACCA*UCUUA	1
GUGCCU*GGGCA	1
CAUAU*GUAUA	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_82188.5	Only in the parent motif
IL_82188.4 Compare	IL_1S72_069, IL_2OIU_002, IL_4A1B_090, IL_2QBZ_005, IL_4CUV_096	IL_4W21_101, IL_4W23_001	IL_1VWW_103, IL_4CUX_011

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
Heat map statistics: Min 0.13 | Avg 0.55 | Max 0.91

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Coloring options: Nucleotide numbers

Motif IL_82188.5 Version IL_82188.5 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_82188.5 Version IL_82188.5 of this group appears in releases 1.18 to 1.18

Download

Csv

Json