IL_4W23_033

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77895.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4W23|1|2|C|676
4W23|1|2|G|677
4W23|1|2|U|678
4W23|1|2|A|679
4W23|1|2|G|680
*
4W23|1|2|U|1025
4W23|1|2|C|1026
4W23|1|2|A|1027
4W23|1|2|A|1028
4W23|1|2|G|1029

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein uS17

Chain N

Ribosomal protein uS15

Chain W

Ribosomal protein uS8

Chain X

Ribosomal protein uS12