IL_77895.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6	7-8
1	IL_3J7A_061	3J7A	0.9374	1		A	SSU rRNA	C	1440	C	1441	U	1442	C	1444	U	1445	*	A	1628	G	1629	A	1630	G	1631	G	1632	cWW		ncWW		cWW
2	IL_4IOA_026	4IOA	0.5905	0	5x5 Sarcin-Ricin with intercalated A; G-bulge	X	LSU rRNA	C	927	G	928	A	929	A	930	G	931	*	U	871	G	872	U	873	A	874	G	875	cWW	tSH	tHW		cWW	ncSH
3	IL_2QBG_058	2QBG	0.5062	0		B	23S rRNA	U	1513	G	1514	A	1515	G	1516	G	1517	*	U	1474	G	1475	U	1476	A	1477	G	1478	cWW	tSH	tHW		cWW
4	IL_2QWY_004	2QWY	0.5343	0		B	SAM-II riboswitch	A	46	A	47	A	48	A	49	G	50	*	C	16	G	17	U	18	A	19	U	20	cWW	tSH	tHW		cWW
5	IL_1S72_023	1S72	0.2522	0	tSH-tHW-tHS (H)	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW	tSH	tHW	tHS	cWW
6	IL_1S72_055	1S72	0.2893	0	tSH-tHW-tHS (H)	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW	tSH	tHW	tHS	cWW
7	IL_2AW7_040	2AW7	0.1930	0		A	16S ribosomal RNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
8	IL_1FJG_033	1FJG	0.1585	0	tSH-tHW-tHS (H)	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
9	IL_4BPP_049	4BPP	0.0953	0		A	18S RRNA	C	968	A	969	A	970	A	971	G	972	*	C	988	G	989	U	990	A	991	G	992	cWW	tSH	tHW	tHS	cWW
10	IL_3U5F_053	3U5F	0.0000	0		6	18S rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	tSH	tHW	tHS	cWW
11	IL_4BPP_035	4BPP	0.1821	0		A	18S RRNA	U	946	C	947	A	948	A	949	G	950	*	C	621	G	622	U	623	A	624	G	625	cWW	tSH	tHW	tHS	cWW
12	IL_3U5F_035	3U5F	0.1589	0		6	18S rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW	tSH	tHW	tHS	cWW
13	IL_3J7A_029	3J7A	0.1435	0	tSH-tHW-tHS (H)	A	SSU rRNA	U	1037	C	1038	A	1039	A	1040	G	1041	*	C	634	G	635	U	636	A	637	G	638	cWW	ntSH	tHW	tHS	cWW
14	IL_4W23_033	4W23	0.2031	0		2	18S ribosomal RNA	U	1025	C	1026	A	1027	A	1028	G	1029	*	C	676	G	677	U	678	A	679	G	680	cWW	ntSH	ntHW
15	IL_1FJG_023	1FJG	0.2334	0	tSH-tHW-tHS (H)	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW	tSH	tHW		cWW
16	IL_2AW7_030	2AW7	0.2005	0		A	16S ribosomal RNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
17	IL_4IOA_051	4IOA	0.2877	0	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW	tSH	tHW	ntHS	cWW	ncSH
18	IL_2QBG_052	2QBG	0.2429	0		B	23S rRNA	C	1357	G	1358	A	1359	G	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH	tHW	tHS	cWW
19	IL_4QCN_049	4QCN	0.3962	0		A	23S Ribosomal RNA	U	1403	G	1404	A	1405	A	1406	G	1407	*	C	1416	G	1417	U	1418	A	1419	G	1420	cWW	tSH	ntWW	tHS	cWW
20	IL_4CUX_050	4CUX	0.3665	0		2	18S RRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	ntSH		ntHS	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCAAG*CGUAG	4
UGAGG*UGUAG	2
CAAAC*GGUAG	2
CGAAG*CGUAG	2
CCUGCU*AGAGG	1
CGAAG*UGUAG	1
AAAAG*CGUAU	1
CGAGG*CGCAG	1
UCAAC*GGUCG	1
CAAAG*CGUAG	1
UCAGG*CGCAG	1
UGAGG*CGCAG	1
CGAGG*CGUAG	1
UGAAG*CGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GUA	4
AAA*GUA	4
CAA*GUA	4
GAG*GUA	3
GAG*GCA	2
CUGC*GAG	1
CAA*GUC	1
CAG*GCA	1

Release history

Release	1.18
Date	2014-10-07
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_77895.1	Only in the parent motif
IL_24982.8 Compare	IL_1S72_055, IL_3U5F_053, IL_2QBG_052, IL_2QBG_058, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_4IOA_051, IL_4QCN_049, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026	IL_4W23_033, IL_4CUX_050, IL_3J7A_061	IL_2QBG_019, IL_4IOA_012, IL_3DHS_004, IL_3J7A_047
IL_87899.1 Compare	IL_4CUX_050	IL_1S72_055, IL_4W23_033, IL_2QBG_052, IL_2QBG_058, IL_3U5F_053, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_4IOA_051, IL_4QCN_049, IL_3J7A_061, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026	IL_2QBG_031, IL_1S72_034, IL_4QCN_027
IL_81965.1 Compare	IL_3J7A_061	IL_1S72_055, IL_4W23_033, IL_2QBG_052, IL_2QBG_058, IL_3U5F_053, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_4IOA_051, IL_4QCN_049, IL_4CUX_050, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026	IL_4BPP_028, IL_1VX6_113, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_1VX2_035, IL_2QWY_001, IL_2QBG_024, IL_1S72_028, IL_4CUX_006, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_1VW3_083, IL_3IWN_002, IL_4CUX_047, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_068, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_1VWW_092, IL_2AW7_058, IL_1VWW_098, IL_1VWW_077, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072, IL_1VX2_078

Children motifs

This motif has no children motifs.

Motif IL_77895.1 Version IL_77895.1 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_77895.1 Version IL_77895.1 of this group appears in releases 1.18 to 1.18

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Csv

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