IL_4W23_037

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90735.3

Basepair signature

cWW-cWW-L-R-R-R-R-R-L-L-L-L-L-cWW

Number of instances in this motif group

3

Unit IDs

4W23|1|2|G|807
4W23|1|2|A|808
4W23|1|2|A|809
4W23|1|2|A|810
4W23|1|2|A|811
4W23|1|2|A|812
4W23|1|2|A|813
4W23|1|2|U|814
4W23|1|2|U|815
*
4W23|1|2|A|849
4W23|1|2|C|850
4W23|1|2|C|851
4W23|1|2|G|852
4W23|1|2|C|853
4W23|1|2|A|854
4W23|1|2|G|855
4W23|1|2|C|856

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain J

Ribosomal protein uS4

Chain L

Ribosomal protein uS17

Chain W

Ribosomal protein uS8