IL_4W23_051

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGC*GGGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58261.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4W23|1|2|C|1098
4W23|1|2|G|1099
4W23|1|2|A|1100
4W23|1|2|U|1101
4W23|1|2|G|1102
4W23|1|2|C|1103
*
4W23|1|2|G|1129
4W23|1|2|G|1130
4W23|1|2|G|1131
4W23|1|2|C|1132
4W23|1|2|A|1133
4W23|1|2|G|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uS2

Chain B

Ribosomal protein eS1

Chain N

Ribosomal protein uS15

Chain R

Ribosomal protein eS17

Chain a

Ribosomal protein eS26

Chain b

Ribosomal protein eS27