IL_4W23_052

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54405.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-L-R-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4W23|1|2|G|1168
4W23|1|2|G|1169
4W23|1|2|A|1170
4W23|1|2|G|1171
4W23|1|2|U|1172
4W23|1|2|A|1173
4W23|1|2|U|1174
4W23|1|2|G|1175
4W23|1|2|G|1176
*
4W23|1|2|C|1185
4W23|1|2|U|1186
4W23|1|2|G|1187
4W23|1|2|A|1188
4W23|1|2|A|1189
4W23|1|2|A|1190
4W23|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Ribosomal protein uS12