IL_4W23_071

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73281.2

Basepair signature

cWW-tSH-tHW-L-cSH-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4W23|1|2|G|1604
4W23|1|2|G|1605
4W23|1|2|G|1606
4W23|1|2|A|1607
4W23|1|2|U|1608
4W23|1|2|C|1609
4W23|1|2|G|1610
*
4W23|1|2|C|1629
4W23|1|2|A|1630
4W23|1|2|U|1631
4W23|1|2|G|1632
4W23|1|2|A|1633
4W23|1|2|A|1634
4W23|1|2|C|1635

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Ribosomal protein uS13

Chain T

Ribosomal protein eS19