Motif IL_73281.2 Version IL_73281.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 5-10 | 6-9 | 7-8 | 11-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4W23_071 | 4W23 | 0.8137 | 0 | 2 | G | 1604 | G | 1605 | G | 1606 | A | 1607 | U | 1608 | C | 1609 | G | 1610 | * | C | 1629 | A | 1630 | U | 1631 | G | 1632 | A | 1633 | A | 1634 | C | 1635 | ncWW | tSH | ntSH | ncWw | cWW | ||
| 2 | IL_4CUX_078 | 4CUX | 0.7853 | 0 | 2 | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | G | 1546 | * | C | 1565 | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | cWW | ntSH | cWw | ncWW | |||
| 3 | IL_4CUV_043 | 4CUV | 0.1016 | 0 | 1 | U | 1052 | A | 1053 | A | 1054 | A | 1055 | U | 1056 | A | 1057 | U | 1058 | * | G | 991 | A | 992 | G | 993 | G | 994 | U | 995 | A | 996 | A | 997 | cWW | tSH | tHW | cBW | cWw | ncWW | ncSH |
| 4 | IL_3U5H_040 | 3U5H | 0.0000 | 0 | 5 | U | 1052 | A | 1053 | A | 1054 | A | 1055 | U | 1056 | A | 1057 | U | 1058 | * | G | 991 | A | 992 | G | 993 | G | 994 | U | 995 | A | 996 | A | 997 | cWW | tSH | tHW | cBW | cWw | cWW | cSH |
| 5 | IL_1VX6_045 | 1VX6 | 0.1669 | 0 | A | C | 1175 | C | 1176 | A | 1177 | A | 1178 | U | 1179 | A | 1180 | G | 1181 | * | C | 1113 | A | 1114 | G | 1115 | G | 1116 | U | 1117 | A | 1118 | G | 1119 | cWW | tSH | tHW | cBW | cWw | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAAUAU*GAGGUAA | 2 |
| GGGAUCG*CAUGAAC | 1 |
| GGGAUAG*CUUCAAC | 1 |
| CCAAUAG*CAGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAUA*AGGUA | 2 |
| GGAUC*AUGAA | 1 |
| GGAUA*UUCAA | 1 |
| CAAUA*AGGUA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_73281.2 | Only in the parent motif |
|---|---|---|---|
| IL_73281.1 Compare | IL_4CUV_043, IL_1VX6_045, IL_3U5H_040, IL_4CUX_078 | IL_4W23_071 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-tHW-L-cSH-R-L-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.45 | Max 0.84
Coloring options: