IL_4W23_097

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UACG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W23_097 not in the Motif Atlas

Geometric match to IL_7LYF_001

Geometric discrepancy: 0.3574

The information below is about IL_7LYF_001

Detailed Annotation

Isolated cWH basepair with non-canonical cWW

Broad Annotation

Isolated cWH basepair with non-canonical cWW

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4W23|1|2|U|1560
4W23|1|2|A|1561
4W23|1|2|C|1562
4W23|1|2|G|1563
*
4W23|1|2|C|1572
4W23|1|2|G|1573
4W23|1|2|C|1574
4W23|1|2|G|1575

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uS19

Chain T

Ribosomal protein eS19