IL_4W29_075

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_075 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1982

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.9

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4W29|1|BA|G|188
4W29|1|BA|G|189
4W29|1|BA|A|190
4W29|1|BA|A|191
4W29|1|BA|C|192
4W29|1|BA|U|193
4W29|1|BA|G|194
*
4W29|1|BA|C|201
4W29|1|BA|U|202
4W29|1|BA|C|203
4W29|1|BA|A|204
4W29|1|BA|G|205
4W29|1|BA|U|206
4W29|1|BA|A|207
4W29|1|BA|C|208

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain B7

50S ribosomal protein L34