IL_4W29_086

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4W29|1|BA|G|801, 4W29|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W29_086 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.2863

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.1

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

6

Unit IDs

4W29|1|BA|G|674
4W29|1|BA|A|675
4W29|1|BA|A|676
4W29|1|BA|A|677
4W29|1|BA|C|678
*
4W29|1|BA|G|799
4W29|1|BA|A|800
4W29|1|BA|G|801
4W29|1|BA|A|802
4W29|1|BA|U|803
4W29|1|BA|A|804
4W29|1|BA|G|805
4W29|1|BA|C|806

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15